[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 77 items for (author: smith & sp)

EMDB-16328:
Outer membrane attachment porin OmpM1 from Veillonella parvula
Method: single particle / : Silale A, van den Berg B

EMDB-16332:
Outer membrane attachment porin OmpM1 from Veillonella parvula, native
Method: single particle / : Silale A, van den Berg B

EMDB-16333:
Outer membrane attachment porin OmpM1 from Veillonella parvula, C3 symmetry
Method: single particle / : Silale A, van den Berg B

EMDB-41153:
Integrin alpha-v beta-8 in complex with minibinder B8_BP_dsulf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

EMDB-41154:
Integrin alpha-v beta-6 in complex with minibinder B6_BP_dslf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

PDB-8tcf:
Integrin alpha-v beta-8 in complex with minibinder B8_BP_dsulf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

PDB-8tcg:
Integrin alpha-v beta-6 in complex with minibinder B6_BP_dslf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

EMDB-41158:
CS2it1p2_F7K local refinement for HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab
Method: single particle / : Goldsmith JA, McLellan JS

EMDB-41180:
Global reconstruction for HCMV Pentamer in complex with CS2pt1p2_A10L Fab and CS3pt1p4_C1L Fab
Method: single particle / : Goldsmith JG, McLellan JS

EMDB-26809:
KDM2A-nucleosome structure stabilized by H3K36C-UNC8015 covalent conjugate
Method: single particle / : Spangler CJ, Skrajna A, Foley CA, Budziszewski GR, Azzam DN, James LI, Frye SV, McGinty RK

EMDB-26810:
KDM2B-nucleosome complex stabilized by H3K36C-UNC8015 covalent conjugate
Method: single particle / : Spangler CJ, Skrajna A, Foley CA, Budziszewski GR, Azzam DN, James LI, Frye SV, McGinty RK

PDB-7uv9:
KDM2A-nucleosome structure stabilized by H3K36C-UNC8015 covalent conjugate
Method: single particle / : Spangler CJ, Skrajna A, Foley CA, Budziszewski GR, Azzam DN, James LI, Frye SV, McGinty RK

EMDB-15636:
Human 80S ribosome structure from pFIB-lamellae
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16185:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer: 15 to 30 nm
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16186:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer: above 30 nm matched control (for 15 to 30 nm)
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16192:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer:30 to 45 nm
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16193:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer: above 45 nm matched control (for 30 to 45 nm)
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16194:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer:45 to 60 nm
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16195:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer: above 60 nm matched control (for 45 to 60 nm)
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16196:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer: 0 to 15 nm
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16199:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer: above 15 nm matched control (for 0 to 15 nm)
Method: subtomogram averaging / : Berger C, Grange M

EMDB-27254:
SARS-CoV-2 Spike RBD in complex with DMAbs 2130 and 2196
Method: single particle / : Du J, Cui J, Pallesen J

EMDB-27255:
SARS-CoV-2 Spike RBD in complex with DMAb 2196
Method: single particle / : Du J, Cui J, Pallesen J

PDB-8d8q:
SARS-CoV-2 Spike RBD in complex with DMAbs 2130 and 2196
Method: single particle / : Du J, Cui J, Pallesen J

PDB-8d8r:
SARS-CoV-2 Spike RBD in complex with DMAb 2196
Method: single particle / : Du J, Cui J, Pallesen J

EMDB-27730:
SARS-CoV-2 Wuhan-hu-1-Spike-RBD bound to linker variant of affinity matured ACE2 mimetic CVD432
Method: single particle / : QCRG Structural Biology Consortium, Remesh SG, Merz GE, Brilot AF, Chio U, Verba KA

EMDB-27731:
SARS-CoV-2 Wuhan-hu-1-Spike-RBD bound to computationally engineered ACE2 mimetic CVD293
Method: single particle / : QCRG Structural Biology Consortium, Remesh SG, Merz GE, Brilot AF, Chio U, Verba KA

PDB-8dv1:
SARS-CoV-2 Wuhan-hu-1-Spike-RBD bound to linker variant of affinity matured ACE2 mimetic CVD432
Method: single particle / : QCRG Structural Biology Consortium, Remesh SG, Merz GE, Brilot AF, Chio U, Verba KA

PDB-8dv2:
SARS-CoV-2 Wuhan-hu-1-Spike-RBD bound to computationally engineered ACE2 mimetic CVD293
Method: single particle / : QCRG Structural Biology Consortium, Remesh SG, Merz GE, Brilot AF, Chio U, Verba KA

EMDB-25376:
BG505.MD39TS Env trimer in complex with Fab from antibody C05
Method: single particle / : Moore A, Du J, Xu Z, Walker S, Kulp DW, Pallesen J

PDB-7sq1:
BG505.MD39TS Env trimer in complex with Fab from antibody C05
Method: single particle / : Moore A, Du J, Xu Z, Walker S, Kulp DW, Pallesen J

EMDB-24533:
SARS-CoV-2 spike protein bound to the S2P6 and S2M11 Fab fragments
Method: single particle / : Sauer MM, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-23970:
Full length SARS-CoV-2 Nsp2
Method: single particle / : QCRG Structural Biology Consortium

EMDB-23971:
SARS-CoV-2 Nsp2
Method: single particle / : QCRG Structural Biology Consortium

PDB-7msw:
Full length SARS-CoV-2 Nsp2
Method: single particle / : QCRG Structural Biology Consortium

PDB-7msx:
SARS-CoV-2 Nsp2
Method: single particle / : QCRG Structural Biology Consortium

EMDB-23898:
SARS-CoV-2 Spike in complex with neutralizing Fab SARS2-38 (three down conformation)
Method: single particle / : Adams LJ, Fremont DH, Center for Structural Genomics of Infectious Diseases (CSGID)

EMDB-23899:
SARS-CoV-2 Spike RBD in complex with neutralizing Fab SARS2-38 (local refinement)
Method: single particle / : Adams LJ, Fremont DH, Center for Structural Genomics of Infectious Diseases (CSGID)

EMDB-22907:
SARS-CoV-2 Spike bound to Nb6 in closed conformation
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

EMDB-22908:
SARS-CoV-2 Spike bound to Nb6 in open conformation
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

EMDB-22909:
SARS-CoV-2 Spike bound to Nb11 in closed conformation
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

EMDB-22910:
SARS-CoV-2 Spike bound to mNb6 in closed conformation
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

EMDB-22911:
SARS-CoV-2 Spike bound to Nb11 in open conformation
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

PDB-7kkk:
SARS-CoV-2 Spike in complex with neutralizing nanobody Nb6
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Liu Y, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

PDB-7kkl:
SARS-CoV-2 Spike in complex with neutralizing nanobody mNb6
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Liu Y, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

EMDB-22829:
Human Tom70 in complex with SARS CoV2 Orf9b
Method: single particle / : QCRG Structural Biology Consortium

PDB-7kdt:
Human Tom70 in complex with SARS CoV2 Orf9b
Method: single particle / : QCRG Structural Biology Consortium

EMDB-22491:
SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody Fab fragment (local refinement of the receptor-binding motif and Fab variable domains)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

EMDB-22492:
SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody (one RBD open)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

EMDB-22494:
SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody (closed conformation)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more